Variant report

Variant	rs58106576
Chromosome Location	chr11:72043477-72043478
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72037535..72041965-chr11:72042144..72047706,5	K562	blood:
2	chr11:72041520..72043853-chr11:72052921..72055836,2	K562	blood:
3	chr11:72037487..72041965-chr11:72042972..72047706,6	K562	blood:
4	chr11:72035783..72037899-chr11:72043244..72045662,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56723028	1.00[EUR][1000 genomes]
rs58199047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59514150	1.00[EUR][1000 genomes]
rs73532646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72002800-72044600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:72008400-72044600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:72014600-72045000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:72025600-72054000	Weak transcription	GM12878-XiMat	blood
6	chr11:72026200-72044600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:72026600-72067400	Weak transcription	Fetal Intestine Large	intestine
8	chr11:72026800-72044200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:72027000-72044800	Weak transcription	Colonic Mucosa	Colon
10	chr11:72027200-72045000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:72027600-72060600	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:72027800-72044200	Weak transcription	Thymus	Thymus
13	chr11:72028000-72045200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:72028200-72044600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:72028200-72044800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:72028400-72060800	Weak transcription	Gastric	stomach
17	chr11:72028600-72047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:72030600-72060200	Weak transcription	Adipose Nuclei	Adipose
19	chr11:72032800-72054600	Weak transcription	Brain Anterior Caudate	brain
20	chr11:72033000-72075600	Weak transcription	A549	lung
21	chr11:72033200-72063800	Weak transcription	Aorta	Aorta
22	chr11:72034200-72047600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:72038200-72071200	Weak transcription	HMEC	breast
24	chr11:72038400-72049800	Weak transcription	NHDF-Ad	bronchial
25	chr11:72038400-72053600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:72038400-72076600	Weak transcription	Liver	Liver
27	chr11:72038800-72044400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:72038800-72060600	Weak transcription	Esophagus	oesophagus
29	chr11:72039400-72044600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:72039400-72060400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:72039600-72049400	Weak transcription	HSMMtube	muscle
32	chr11:72039800-72044400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:72039800-72077400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:72040000-72048000	Weak transcription	NHEK	skin
35	chr11:72040000-72060200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:72040000-72070800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:72040200-72044600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:72040200-72044600	Weak transcription	Osteobl	bone
39	chr11:72040200-72044800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:72040400-72044800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:72040400-72045000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:72040400-72046800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr11:72040400-72047000	Weak transcription	Fetal Stomach	stomach
44	chr11:72040400-72047600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:72040400-72049600	Weak transcription	Spleen	Spleen
46	chr11:72040400-72053800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:72040400-72060600	Weak transcription	Ovary	ovary
48	chr11:72040400-72069400	Weak transcription	Fetal Brain Female	brain
49	chr11:72040600-72044200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:72040600-72047800	Weak transcription	Pancreas	Pancrea

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