Variant report

Variant	rs58119860
Chromosome Location	chr19:36853018-36853019
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55846524	1.00[AMR][1000 genomes]
rs59329149	1.00[AMR][1000 genomes]
rs73928531	1.00[AMR][1000 genomes]
rs73928609	1.00[AMR][1000 genomes]
rs73928635	1.00[AMR][1000 genomes]
rs73928642	1.00[AMR][1000 genomes]
rs73928793	1.00[AMR][1000 genomes]
rs73928795	1.00[AMR][1000 genomes]
rs73931539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064343	chr19:36807288-36853102	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv174	chr19:36831719-36865415	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv579459	chr19:36845537-36856379	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36823800-36853600	ZNF genes & repeats	Liver	Liver
2	chr19:36827200-36862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:36830600-36869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:36832200-36868600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:36834000-36857400	Weak transcription	Brain Substantia Nigra	brain
6	chr19:36834200-36868800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr19:36835800-36857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:36835800-36868800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr19:36836400-36858400	Weak transcription	Osteobl	bone
10	chr19:36836400-36868000	Weak transcription	Psoas Muscle	Psoas
11	chr19:36836600-36857200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:36836600-36863400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr19:36838000-36868600	Weak transcription	Stomach Mucosa	stomach
14	chr19:36838200-36855000	Weak transcription	HSMM	muscle
15	chr19:36840000-36855000	Weak transcription	Right Ventricle	heart
16	chr19:36840000-36856000	Weak transcription	Fetal Lung	lung
17	chr19:36841200-36854800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr19:36842400-36861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr19:36844200-36868800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:36845200-36853200	Strong transcription	Adipose Nuclei	Adipose
21	chr19:36845200-36858200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr19:36845600-36853200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr19:36845600-36853200	Strong transcription	Brain Germinal Matrix	brain
24	chr19:36845800-36859200	Weak transcription	Fetal Thymus	thymus
25	chr19:36846000-36853200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr19:36846000-36855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr19:36846600-36866400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr19:36847000-36853400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr19:36847200-36853200	Strong transcription	Brain Angular Gyrus	brain
30	chr19:36847200-36853200	Strong transcription	Thymus	Thymus
31	chr19:36847200-36853400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr19:36847200-36853600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr19:36847200-36859200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr19:36847200-36859800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr19:36847400-36853200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:36847400-36853400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr19:36847400-36853400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr19:36847400-36853400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr19:36847400-36853400	Strong transcription	Dnd41	blood
40	chr19:36847400-36853600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr19:36847400-36862200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
42	chr19:36847600-36855800	Weak transcription	Fetal Muscle Leg	muscle
43	chr19:36847800-36853400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr19:36848200-36860200	Weak transcription	NHDF-Ad	bronchial
45	chr19:36848400-36853400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr19:36848400-36861000	Weak transcription	NH-A	brain
47	chr19:36848800-36862000	Weak transcription	Hela-S3	cervix
48	chr19:36849000-36853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:36849000-36853400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr19:36849200-36853400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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