Variant report

Variant	rs58123624
Chromosome Location	chr5:36816426-36816427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36806723..36808455-chr5:36815050..36816669,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13156908	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13162626	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13163996	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13164726	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13176635	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13181330	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13181860	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13186745	0.86[EUR][1000 genomes]
rs13187028	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1353256	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16903418	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17312211	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs188383	0.89[EUR][1000 genomes]
rs213513	0.94[EUR][1000 genomes]
rs289216	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs293753	0.93[EUR][1000 genomes]
rs293754	0.93[EUR][1000 genomes]
rs293775	0.88[EUR][1000 genomes]
rs298973	0.94[EUR][1000 genomes]
rs34218486	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34272373	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34697946	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34807025	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34911537	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35127161	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35167018	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35357341	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35394109	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35809470	0.94[EUR][1000 genomes]
rs36035695	0.95[EUR][1000 genomes]
rs3776594	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62654860	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6868809	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6894622	0.86[EUR][1000 genomes]
rs71617772	0.89[EUR][1000 genomes]
rs71617774	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7700441	0.93[EUR][1000 genomes]
rs7704442	0.94[EUR][1000 genomes]
rs7716192	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs923957	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv527961	chr5:36781051-36828730	Enhancers Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36816400-36821000	Weak transcription	K562	blood

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