Variant report

Variant	rs58133122
Chromosome Location	chr1:215533566-215533567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13375155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376355	0.96[AFR][1000 genomes]
rs17024724	1.00[AMR][1000 genomes]
rs17024732	0.97[AFR][1000 genomes]
rs1876408	1.00[AFR][1000 genomes]
rs28555458	1.00[AMR][1000 genomes]
rs57186357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58342290	0.94[AFR][1000 genomes]
rs61059263	0.94[AFR][1000 genomes]
rs61652140	1.00[AMR][1000 genomes]
rs73090129	1.00[AMR][1000 genomes]
rs73090172	1.00[AFR][1000 genomes]
rs73090177	1.00[AFR][1000 genomes]
rs73090179	0.96[AFR][1000 genomes]
rs73091957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091959	0.97[AFR][1000 genomes]
rs7546281	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215530600-215534200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:215533000-215534000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:215533200-215533800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:215533200-215534400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:215533400-215534000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:215533400-215534000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:215533400-215534000	Enhancers	Psoas Muscle	Psoas
8	chr1:215533400-215534400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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