Variant report

Variant	rs58149428
Chromosome Location	chr3:142972059-142972060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs60549582	1.00[EUR][1000 genomes]
rs6779325	1.00[EUR][1000 genomes]
rs6787314	0.81[AMR][1000 genomes]
rs72992517	1.00[EUR][1000 genomes]
rs73006214	1.00[EUR][1000 genomes]
rs73006216	1.00[EUR][1000 genomes]
rs73006224	1.00[EUR][1000 genomes]
rs73867204	1.00[EUR][1000 genomes]
rs73867205	1.00[EUR][1000 genomes]
rs73867211	1.00[EUR][1000 genomes]
rs73867212	1.00[EUR][1000 genomes]
rs73867295	1.00[EUR][1000 genomes]
rs7636796	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142963600-142995400	Weak transcription	Primary T cells from cord blood	blood
2	chr3:142968600-142973000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:142968600-142973000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:142968600-142973200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:142971400-142972200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:142971400-142972400	Enhancers	HSMM	muscle
7	chr3:142971400-142973000	Enhancers	HSMMtube	muscle
8	chr3:142971600-142972400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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