Variant report

Variant	rs58150842
Chromosome Location	chr11:17506684-17506685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11024302	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024306	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024307	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281584	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294674	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36234278	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55735208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56063548	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56070367	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56130449	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56361848	0.84[EUR][1000 genomes]
rs57520450	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985571	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17501600-17507600	Weak transcription	Gastric	stomach
2	chr11:17504600-17507800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:17505800-17508800	Enhancers	Fetal Intestine Small	intestine
4	chr11:17506200-17508800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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