Variant report

Variant	rs58164259
Chromosome Location	chr1:211630525-211630526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211624302..211626627-chr1:211630248..211632637,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10458470	1.00[EUR][1000 genomes]
rs10779551	0.84[EUR][1000 genomes]
rs10863885	0.84[EUR][1000 genomes]
rs11119714	0.84[EUR][1000 genomes]
rs11119717	0.84[EUR][1000 genomes]
rs11119720	0.84[EUR][1000 genomes]
rs11119725	0.84[EUR][1000 genomes]
rs11119731	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11119733	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11119734	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11119737	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11119738	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119740	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12022961	1.00[AFR][1000 genomes]
rs12027277	0.92[EUR][1000 genomes]
rs12028306	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12030854	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12032988	1.00[EUR][1000 genomes]
rs12033418	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12035966	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12039683	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12039915	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12041794	0.84[EUR][1000 genomes]
rs12042216	0.84[EUR][1000 genomes]
rs12046975	0.84[EUR][1000 genomes]
rs12065190	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12080561	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085730	0.84[EUR][1000 genomes]
rs12097572	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17017360	0.84[EUR][1000 genomes]
rs17017401	0.84[EUR][1000 genomes]
rs2289758	1.00[EUR][1000 genomes]
rs3738201	1.00[EUR][1000 genomes]
rs3738202	0.92[EUR][1000 genomes]
rs57093875	0.84[EUR][1000 genomes]
rs58510761	1.00[EUR][1000 genomes]
rs60169087	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61624054	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336593	chr1:211629729-211632027	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211627800-211633200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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