Variant report

Variant	rs58170348
Chromosome Location	chr14:66002875-66002876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66002294..66004964-chr14:66020886..66023654,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10129187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129472	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129732	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130560	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10133167	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10133902	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133903	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135594	1.00[EUR][1000 genomes]
rs10135934	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136763	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141293	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143822	1.00[EUR][1000 genomes]
rs10145561	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145993	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145996	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146179	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10151921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162379	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162474	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10162506	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10220303	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10220304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10483775	0.87[EUR][1000 genomes]
rs10483779	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10483784	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12588029	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379229	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102844	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102896	0.85[AMR][1000 genomes]
rs1813030	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1950559	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1953419	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1958562	0.93[EUR][1000 genomes]
rs1959146	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1959147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1959148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2002691	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2092915	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411814	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2411818	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2411819	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28373922	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28390075	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28427101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28430347	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28694288	1.00[EUR][1000 genomes]
rs28695252	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28823043	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28830595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28871950	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2898817	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2898819	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783707	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783712	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4516142	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45549535	0.93[EUR][1000 genomes]
rs57638372	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59970730	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140251	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145319	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145834	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148401	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151690	0.85[AMR][1000 genomes]
rs7160505	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284130	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73284201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8003664	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8014146	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015947	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323462	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323464	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs945319	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9972109	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65984800-66003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:65995200-66028000	Weak transcription	Dnd41	blood
4	chr14:65995400-66004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65995400-66004600	Weak transcription	Pancreas	Pancrea
6	chr14:65995400-66004600	Weak transcription	Thymus	Thymus
7	chr14:65995400-66006600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:65995400-66061000	Weak transcription	Gastric	stomach
9	chr14:65996400-66004200	Weak transcription	Fetal Stomach	stomach
10	chr14:66002200-66003600	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr14:66002200-66005200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:66002400-66028000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr14:66002800-66003600	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr14:66002800-66004000	ZNF genes & repeats	Brain Hippocampus Middle	brain

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