Variant report

Variant	rs58174582
Chromosome Location	chr8:110330129-110330130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110329016..110330835-chr8:110344049..110345997,2	MCF-7	breast:
2	chr8:110328153..110330714-chr8:110345476..110348089,2	MCF-7	breast:
3	chr8:110329067..110331038-chr8:110334185..110335945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120526	Chromatin interaction
ENSG00000120533	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16879239	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879374	1.00[AMR][1000 genomes]
rs1870390	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58370875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59199171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59651628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60279960	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60417655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60584579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61706619	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700814	1.00[AMR][1000 genomes]
rs73700815	1.00[AMR][1000 genomes]
rs73700826	1.00[AMR][1000 genomes]
rs73700827	1.00[AMR][1000 genomes]
rs73700828	1.00[AMR][1000 genomes]
rs73700831	1.00[AMR][1000 genomes]
rs73700837	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700840	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110236600-110344200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:110284400-110344400	Weak transcription	Fetal Lung	lung
3	chr8:110288600-110344200	Weak transcription	Ovary	ovary
4	chr8:110292000-110333200	Weak transcription	HepG2	liver
5	chr8:110293000-110343600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:110307600-110333000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:110312000-110344000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:110312200-110342800	Weak transcription	Left Ventricle	heart
9	chr8:110312400-110344200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:110318200-110331600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:110318400-110344000	Weak transcription	NHLF	lung
12	chr8:110318600-110332800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:110318600-110342800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:110318800-110335200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:110319400-110344200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:110322000-110344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:110322800-110331600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:110323200-110335400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr8:110323200-110340000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:110323600-110331000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:110323600-110332400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:110323600-110333000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr8:110323600-110335400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr8:110324000-110331600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:110324000-110335600	Weak transcription	Thymus	Thymus
26	chr8:110324000-110345400	Weak transcription	Aorta	Aorta
27	chr8:110324200-110331600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr8:110324200-110340400	Weak transcription	K562	blood
29	chr8:110324800-110344000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr8:110325200-110331400	Weak transcription	Fetal Muscle Leg	muscle
31	chr8:110325200-110331600	Weak transcription	Primary B cells from cord blood	blood
32	chr8:110325200-110333000	Weak transcription	Dnd41	blood
33	chr8:110325200-110341400	Weak transcription	HSMM	muscle
34	chr8:110325200-110342000	Weak transcription	A549	lung
35	chr8:110325200-110344400	Weak transcription	Pancreas	Pancrea
36	chr8:110325200-110344400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:110325200-110344400	Weak transcription	Small Intestine	intestine
38	chr8:110325200-110344800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:110325400-110337400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr8:110325400-110344200	Weak transcription	Fetal Heart	heart
41	chr8:110325600-110331600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:110325800-110331400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr8:110325800-110337000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:110326600-110335200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:110326600-110344000	Weak transcription	Osteobl	bone
46	chr8:110327800-110338600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr8:110328000-110331000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr8:110328000-110344400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:110328200-110331400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:110328200-110331400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links