Variant report

Variant	rs58179454
Chromosome Location	chr7:101762199-101762200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101745992..101748266-chr7:101761633..101763721,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10227131	0.87[EUR][1000 genomes]
rs1107462	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1107463	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16869536	0.80[ASN][1000 genomes]
rs17135072	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17135077	0.84[AMR][1000 genomes]
rs201460	0.95[ASN][1000 genomes]
rs201465	0.95[ASN][1000 genomes]
rs2268031	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2268032	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28607250	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28715132	0.85[EUR][1000 genomes]
rs57242832	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57517296	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57634989	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59140055	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60345263	0.87[EUR][1000 genomes]
rs60679727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60795390	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61170107	0.89[EUR][1000 genomes]
rs61212564	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61232541	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61484374	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73408014	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7800374	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101708200-101765000	Weak transcription	Small Intestine	intestine
2	chr7:101738600-101763600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr7:101738800-101763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:101738800-101764200	Strong transcription	Fetal Thymus	thymus
5	chr7:101739200-101763400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr7:101740400-101763400	Strong transcription	Dnd41	blood
7	chr7:101740400-101764000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:101741000-101765000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:101741600-101764800	Weak transcription	Stomach Mucosa	stomach
10	chr7:101744600-101765000	Weak transcription	HUVEC	blood vessel
11	chr7:101746000-101765000	Weak transcription	HMEC	breast
12	chr7:101746600-101764200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:101747800-101762800	Weak transcription	Fetal Kidney	kidney
14	chr7:101748600-101765000	Weak transcription	NHEK	skin
15	chr7:101750200-101771000	Weak transcription	Fetal Heart	heart
16	chr7:101751600-101764800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:101753400-101763600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr7:101754400-101764200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:101754600-101765000	Strong transcription	Fetal Intestine Small	intestine
20	chr7:101754800-101762800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:101754800-101764200	Strong transcription	Thymus	Thymus
22	chr7:101755200-101762600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:101755200-101765000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:101755200-101787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr7:101755400-101762400	Strong transcription	Fetal Stomach	stomach
26	chr7:101755400-101765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:101755400-101773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:101756200-101763600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:101756200-101764000	Strong transcription	Fetal Intestine Large	intestine
30	chr7:101756400-101763400	Strong transcription	Spleen	Spleen
31	chr7:101756600-101763000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:101756800-101762200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:101757200-101763800	Strong transcription	Primary T cells from cord blood	blood
34	chr7:101758400-101763600	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr7:101759200-101762400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:101759200-101765000	Weak transcription	Psoas Muscle	Psoas
37	chr7:101759400-101762400	Weak transcription	Fetal Brain Female	brain
38	chr7:101759400-101764800	Weak transcription	Esophagus	oesophagus
39	chr7:101759400-101770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr7:101759600-101763400	Weak transcription	GM12878-XiMat	blood
41	chr7:101759600-101764800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:101759600-101765000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:101759800-101762200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:101759800-101762400	Weak transcription	Brain Angular Gyrus	brain
45	chr7:101759800-101762400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:101759800-101762400	Weak transcription	Ovary	ovary
47	chr7:101759800-101762400	Weak transcription	HepG2	liver
48	chr7:101759800-101763200	Weak transcription	A549	lung
49	chr7:101759800-101764800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr7:101759800-101764800	Weak transcription	K562	blood

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