Variant report

Variant	rs58191041
Chromosome Location	chr1:210794661-210794662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12401932	0.89[ASN][1000 genomes]
rs59841008	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210790400-210801800	Weak transcription	Pancreas	Pancrea
2	chr1:210790600-210796800	Weak transcription	Ovary	ovary
3	chr1:210790600-210807000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210790800-210795000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:210792800-210795200	Enhancers	Brain Hippocampus Middle	brain
6	chr1:210793000-210795000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:210793400-210795800	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:210793600-210795400	Enhancers	Brain Angular Gyrus	brain
9	chr1:210793600-210795800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr1:210793800-210794800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:210793800-210795200	Enhancers	Brain Anterior Caudate	brain
12	chr1:210793800-210797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:210794000-210795200	Weak transcription	HSMMtube	muscle
14	chr1:210794200-210794800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:210794200-210794800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:210794400-210794800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:210794400-210794800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:210794400-210794800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:210794600-210795200	Enhancers	Brain Germinal Matrix	brain
20	chr1:210794600-210795200	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links