Variant report

Variant	rs582107
Chromosome Location	chr2:21013824-21013825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:21004065..21008489-chr2:21011148..21015007,4	MCF-7	breast:
2	chr2:21011974..21015132-chr2:21020348..21022854,3	K562	blood:
3	chr2:21011633..21014071-chr2:21020775..21024276,4	MCF-7	breast:
4	chr2:21010027..21013837-chr2:21015283..21019599,5	K562	blood:
5	chr2:21013063..21014591-chr2:21025896..21028650,2	K562	blood:
6	chr2:21010574..21014630-chr2:21020251..21023943,4	K562	blood:
7	chr2:21007196..21010157-chr2:21013326..21015310,2	MCF-7	breast:
8	chr2:21012081..21014025-chr2:21016528..21019031,2	MCF-7	breast:
9	chr2:21013463..21017871-chr2:21032418..21036706,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000118961	Chromatin interaction

rs_ID	r²[population]
rs10176721	1.00[EUR][1000 genomes]
rs10200826	1.00[EUR][1000 genomes]
rs11893093	1.00[EUR][1000 genomes]
rs12713675	1.00[EUR][1000 genomes]
rs12720852	1.00[EUR][1000 genomes]
rs12720855	1.00[EUR][1000 genomes]
rs1437408	1.00[EUR][1000 genomes]
rs16988048	1.00[MEX][hapmap]
rs16988071	1.00[EUR][1000 genomes]
rs1866043	1.00[EUR][1000 genomes]
rs340605	0.83[LWK][hapmap];0.87[MKK][hapmap];1.00[EUR][1000 genomes]
rs340608	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340614	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs548324	0.81[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs553687	0.81[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs571566	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57494499	1.00[EUR][1000 genomes]
rs58696000	1.00[EUR][1000 genomes]
rs59882809	1.00[EUR][1000 genomes]
rs59995050	1.00[EUR][1000 genomes]
rs61072469	1.00[EUR][1000 genomes]
rs61478003	1.00[EUR][1000 genomes]
rs61743299	1.00[EUR][1000 genomes]
rs642152	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs648568	1.00[EUR][1000 genomes]
rs662193	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6736533	1.00[EUR][1000 genomes]
rs6759981	1.00[EUR][1000 genomes]
rs72654435	1.00[EUR][1000 genomes]
rs72888848	1.00[EUR][1000 genomes]
rs72888854	1.00[EUR][1000 genomes]
rs72888855	1.00[EUR][1000 genomes]
rs72888859	1.00[EUR][1000 genomes]
rs72890734	1.00[EUR][1000 genomes]
rs72890747	1.00[EUR][1000 genomes]
rs72890758	1.00[EUR][1000 genomes]
rs72890763	1.00[EUR][1000 genomes]
rs72890771	1.00[EUR][1000 genomes]
rs72890775	1.00[EUR][1000 genomes]
rs72890778	1.00[EUR][1000 genomes]
rs72890781	1.00[EUR][1000 genomes]
rs72890784	1.00[EUR][1000 genomes]
rs72890789	1.00[EUR][1000 genomes]
rs72890791	1.00[EUR][1000 genomes]
rs72902534	1.00[EUR][1000 genomes]
rs72902535	1.00[EUR][1000 genomes]
rs72902538	1.00[EUR][1000 genomes]
rs72902540	1.00[EUR][1000 genomes]
rs72902541	1.00[EUR][1000 genomes]
rs72902542	1.00[EUR][1000 genomes]
rs72902544	1.00[EUR][1000 genomes]
rs72902548	1.00[EUR][1000 genomes]
rs73224614	1.00[EUR][1000 genomes]
rs73226544	1.00[EUR][1000 genomes]
rs73226553	1.00[EUR][1000 genomes]
rs73226559	1.00[EUR][1000 genomes]
rs73235063	1.00[EUR][1000 genomes]
rs73235064	1.00[EUR][1000 genomes]
rs73235072	1.00[EUR][1000 genomes]
rs73235079	1.00[EUR][1000 genomes]
rs73235100	1.00[EUR][1000 genomes]
rs73237114	1.00[EUR][1000 genomes]
rs73237135	1.00[EUR][1000 genomes]
rs73237147	1.00[EUR][1000 genomes]
rs839914	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
2	chr2:20994800-21021600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:20994800-21021600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:20994800-21021800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:20995000-21017600	Weak transcription	A549	lung
6	chr2:20995200-21021600	Weak transcription	K562	blood
7	chr2:20997400-21018600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:20997400-21021600	Weak transcription	Primary B cells from cord blood	blood
9	chr2:20998200-21021800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:21000200-21017600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:21000400-21021400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:21003600-21021600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:21004200-21018200	Weak transcription	HepG2	liver
14	chr2:21005400-21018400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:21006200-21021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:21006400-21021600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:21010400-21021800	Weak transcription	Primary T cells from cord blood	blood
18	chr2:21010600-21015000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:21010600-21021600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:21011600-21018800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr2:21013600-21018400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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