Variant report

Variant	rs58236569
Chromosome Location	chr14:81624520-81624521
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11622435	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55893992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs741651	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81610800-81630800	Weak transcription	Left Ventricle	heart
2	chr14:81614200-81629400	Weak transcription	Dnd41	blood
3	chr14:81615800-81627400	Weak transcription	Liver	Liver
4	chr14:81619600-81636000	Weak transcription	Psoas Muscle	Psoas
5	chr14:81623000-81625200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr14:81623400-81624600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:81623600-81624600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:81623600-81624600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:81623600-81624600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr14:81623600-81624800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:81624400-81628800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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