Variant report

Variant	rs58245853
Chromosome Location	chr6:150648232-150648233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs58537139	1.00[AMR][1000 genomes]
rs58767325	1.00[AFR][1000 genomes]
rs60342957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6919505	1.00[AFR][1000 genomes]
rs6920413	0.93[AFR][1000 genomes]
rs6932274	1.00[AMR][1000 genomes]
rs73614100	1.00[AFR][1000 genomes]
rs73615806	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615828	1.00[AMR][1000 genomes]
rs73615831	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5538	chr6:150640370-150652751	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3514391	chr6:150642309-150649007	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3514392	chr6:150642709-150648907	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3514394	chr6:150642716-150648318	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150642000-150648400	Weak transcription	Right Ventricle	heart
2	chr6:150643800-150648400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:150646200-150648600	Weak transcription	Lung	lung
5	chr6:150646400-150648400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:150646400-150648400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:150646400-150648400	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:150646400-150648600	Weak transcription	Left Ventricle	heart
9	chr6:150647800-150648600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:150647800-150648600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:150647800-150649600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr6:150648000-150649000	Weak transcription	Psoas Muscle	Psoas
13	chr6:150648200-150648600	Enhancers	Aorta	Aorta
14	chr6:150648200-150648800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:150648200-150648800	Flanking Active TSS	K562	blood
16	chr6:150648200-150649200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:150648200-150649600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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