Variant report

Variant	rs58255328
Chromosome Location	chr9:17788303-17788304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55792543	1.00[AMR][1000 genomes]
rs55880611	1.00[AMR][1000 genomes]
rs60626906	1.00[AMR][1000 genomes]
rs61166306	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642203	1.00[AMR][1000 genomes]
rs73642205	1.00[AMR][1000 genomes]
rs73642209	1.00[AMR][1000 genomes]
rs73642210	1.00[AMR][1000 genomes]
rs73642309	1.00[AMR][1000 genomes]
rs73642311	1.00[AMR][1000 genomes]
rs73642312	1.00[AMR][1000 genomes]
rs73642313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73645328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73645329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73645331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73645332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73645333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646032	1.00[AMR][1000 genomes]
rs7850746	1.00[AMR][1000 genomes]
rs7852328	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17784800-17799400	Weak transcription	Hela-S3	cervix
2	chr9:17787000-17800400	Weak transcription	Fetal Brain Female	brain
3	chr9:17787200-17791000	Weak transcription	Fetal Brain Male	brain
4	chr9:17787600-17788600	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links