Variant report

Variant	rs58255417
Chromosome Location	chr1:211209457-211209458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11119654	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11806852	0.94[ASN][1000 genomes]
rs12022715	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12022739	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12025525	0.94[ASN][1000 genomes]
rs12026311	0.94[ASN][1000 genomes]
rs12026374	0.94[ASN][1000 genomes]
rs12027535	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12030715	0.94[ASN][1000 genomes]
rs12039302	0.83[ASN][1000 genomes]
rs12043937	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12043952	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046391	0.85[ASN][1000 genomes]
rs12070402	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12403500	0.82[EUR][1000 genomes]
rs12406562	0.85[ASN][1000 genomes]
rs12407609	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1501544	0.85[ASN][1000 genomes]
rs1501545	0.85[ASN][1000 genomes]
rs1501548	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1501549	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1501550	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1532682	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4570464	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4575146	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56999636	0.85[ASN][1000 genomes]
rs57045219	0.87[ASN][1000 genomes]
rs57179129	0.94[ASN][1000 genomes]
rs61848562	0.94[ASN][1000 genomes]
rs61848568	0.96[ASN][1000 genomes]
rs61849015	0.83[ASN][1000 genomes]
rs61849024	0.85[ASN][1000 genomes]
rs61850228	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540638	0.83[ASN][1000 genomes]
rs6540648	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659020	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6659135	0.85[ASN][1000 genomes]
rs6663672	0.86[EUR][1000 genomes]
rs6666287	0.83[ASN][1000 genomes]
rs6666342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680997	0.86[ASN][1000 genomes]
rs6687069	0.89[EUR][1000 genomes]
rs6688920	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6689715	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7514606	0.94[ASN][1000 genomes]
rs7515316	0.80[ASN][1000 genomes]
rs7518841	0.83[ASN][1000 genomes]
rs7523929	0.82[ASN][1000 genomes]
rs7529625	0.85[EUR][1000 genomes]
rs7537597	0.88[EUR][1000 genomes]
rs7551412	0.83[ASN][1000 genomes]
rs7553997	0.85[ASN][1000 genomes]
rs7554723	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211208200-211209800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:211209000-211211200	Enhancers	HSMMtube	muscle
5	chr1:211209200-211210000	Genic enhancers	HSMM	muscle
6	chr1:211209200-211211000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:211209200-211211000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:211209200-211211200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:211209200-211211200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:211209200-211211200	Enhancers	NHDF-Ad	bronchial
11	chr1:211209400-211210800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:211209400-211211200	Enhancers	NH-A	brain
13	chr1:211209400-211211200	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links