Variant report

Variant	rs58266560
Chromosome Location	chr3:141576311-141576312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10935439	0.83[AFR][1000 genomes]
rs10935440	0.83[AFR][1000 genomes]
rs10935441	0.83[AFR][1000 genomes]
rs11707087	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11707427	0.83[AFR][1000 genomes]
rs11710724	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16851865	1.00[AFR][1000 genomes]
rs4683638	0.83[AFR][1000 genomes]
rs55704642	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55871459	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56048171	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56410770	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56664943	1.00[AFR][1000 genomes]
rs59115009	1.00[AFR][1000 genomes]
rs59122181	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141565000-141578000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:141568600-141579600	Weak transcription	Fetal Thymus	thymus
3	chr3:141570800-141578600	Weak transcription	Left Ventricle	heart
4	chr3:141572600-141578600	Weak transcription	K562	blood
5	chr3:141572800-141578000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:141573000-141579000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:141573000-141579600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:141573000-141582000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:141573600-141579200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:141574200-141578600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:141574200-141578800	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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