Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10218858	0.82[EUR][1000 genomes]
rs10995547	0.82[EUR][1000 genomes]
rs12573698	0.92[EUR][1000 genomes]
rs16913603	0.92[EUR][1000 genomes]
rs16913709	0.92[EUR][1000 genomes]
rs2339676	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339677	0.92[EUR][1000 genomes]
rs2879546	0.82[EUR][1000 genomes]
rs2879548	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542348	0.82[EUR][1000 genomes]
rs5011544	0.82[EUR][1000 genomes]
rs58296033	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59098547	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322683	0.96[EUR][1000 genomes]
rs73323803	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333876	1.00[ASN][1000 genomes]
rs73333902	1.00[ASN][1000 genomes]
rs73338483	0.96[EUR][1000 genomes]
rs73338488	0.96[EUR][1000 genomes]
rs73338490	0.96[EUR][1000 genomes]
rs73338492	0.96[EUR][1000 genomes]
rs73338494	0.96[EUR][1000 genomes]
rs73338499	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338502	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340468	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340469	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73340484	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7476372	0.82[EUR][1000 genomes]
rs7476747	0.82[EUR][1000 genomes]
rs9414804	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52876800-52900400	Weak transcription	Left Ventricle	heart
2	chr10:52878600-52899200	Weak transcription	Aorta	Aorta
3	chr10:52883800-52896000	Weak transcription	Psoas Muscle	Psoas
4	chr10:52889400-52890200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:52889600-52890000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:52889600-52890000	Enhancers	NHLF	lung
7	chr10:52889600-52890200	Enhancers	HMEC	breast
8	chr10:52889600-52890200	Enhancers	NHDF-Ad	bronchial

Quick Search: