Variant report

Variant	rs58269055
Chromosome Location	chr5:151452143-151452144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151443903..151445789-chr5:151450245..151452999,2	K562	blood:
2	chr5:151448044..151450792-chr5:151450881..151452825,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10079263	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477008	0.90[ASN][1000 genomes]
rs10477009	0.90[ASN][1000 genomes]
rs11956862	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34268622	0.90[ASN][1000 genomes]
rs3909856	0.91[AFR][1000 genomes]
rs3936461	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61322394	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6579917	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66860936	0.90[ASN][1000 genomes]
rs6862288	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868689	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878015	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72802280	0.90[ASN][1000 genomes]
rs72802298	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72802301	0.90[ASN][1000 genomes]
rs72804303	0.90[ASN][1000 genomes]
rs7713100	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7715309	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730910	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7731576	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324717	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324718	0.90[ASN][1000 genomes]
rs9884992	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885356	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv5071	chr5:151438330-151472013	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508384	chr5:151438582-151487326	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151450400-151452800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151451000-151453400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:151451400-151453600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:151451600-151452400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:151451600-151452400	Enhancers	Fetal Muscle Leg	muscle
6	chr5:151451600-151453000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:151451600-151453400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:151451800-151452200	Enhancers	NH-A	brain
9	chr5:151451800-151452600	Enhancers	Fetal Brain Female	brain
10	chr5:151452000-151452200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:151452000-151452200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:151452000-151452400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:151452000-151452800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:151452000-151453000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:151452000-151453600	Enhancers	Brain Germinal Matrix	brain

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