Variant report

Variant	rs58275023
Chromosome Location	chr4:87761195-87761196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13137142	0.91[ASN][1000 genomes]
rs13141097	0.95[ASN][1000 genomes]
rs2705623	0.84[ASN][1000 genomes]
rs2705624	0.84[ASN][1000 genomes]
rs2705627	0.82[ASN][1000 genomes]
rs2922234	0.82[ASN][1000 genomes]
rs4693788	0.88[ASN][1000 genomes]
rs57477100	0.91[ASN][1000 genomes]
rs6531936	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6531937	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73838351	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7656537	0.88[ASN][1000 genomes]
rs7657443	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7663218	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
2	chr4:87752600-87764400	Weak transcription	Adipose Nuclei	Adipose
3	chr4:87753000-87765600	Weak transcription	Esophagus	oesophagus
4	chr4:87753000-87766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:87753200-87762000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:87756400-87761800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:87756400-87762200	Weak transcription	NHDF-Ad	bronchial
8	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:87758800-87761800	Enhancers	Fetal Lung	lung
10	chr4:87759000-87768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:87759600-87762200	Weak transcription	NHLF	lung
12	chr4:87759600-87762400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:87760400-87762000	Enhancers	NHEK	skin
14	chr4:87760600-87761200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:87760600-87765000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:87760600-87767600	Enhancers	HMEC	breast
17	chr4:87760800-87761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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