Variant report
| Variant | rs58280109 |
|---|---|
| Chromosome Location | chr14:32665759-32665760 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10134888 | 1.00[EUR][1000 genomes] |
| rs10143850 | 1.00[EUR][1000 genomes] |
| rs11849454 | 1.00[EUR][1000 genomes] |
| rs12100687 | 1.00[EUR][1000 genomes] |
| rs12100688 | 1.00[EUR][1000 genomes] |
| rs12100768 | 1.00[EUR][1000 genomes] |
| rs12100930 | 1.00[EUR][1000 genomes] |
| rs12100931 | 1.00[EUR][1000 genomes] |
| rs12101226 | 1.00[EUR][1000 genomes] |
| rs17098508 | 1.00[EUR][1000 genomes] |
| rs28765407 | 1.00[EUR][1000 genomes] |
| rs28802314 | 1.00[EUR][1000 genomes] |
| rs28845852 | 1.00[EUR][1000 genomes] |
| rs57218277 | 1.00[EUR][1000 genomes] |
| rs59021515 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59609395 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7140954 | 1.00[EUR][1000 genomes] |
| rs7152059 | 1.00[EUR][1000 genomes] |
| rs7157301 | 1.00[EUR][1000 genomes] |
| rs74041589 | 1.00[EUR][1000 genomes] |
| rs74041590 | 1.00[EUR][1000 genomes] |
| rs74041597 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74041599 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74041600 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8012001 | 1.00[EUR][1000 genomes] |
| rs8021655 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832764 | chr14:32564468-32723213 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:32660200-32669000 | Weak transcription | Primary B cells from peripheral blood | blood |
