Variant report

Variant	rs58280228
Chromosome Location	chr3:23331082-23331083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs35778452	1.00[ASN][1000 genomes]
rs57094069	1.00[ASN][1000 genomes]
rs57221758	1.00[ASN][1000 genomes]
rs57334553	1.00[ASN][1000 genomes]
rs57543939	1.00[ASN][1000 genomes]
rs57604620	1.00[ASN][1000 genomes]
rs58434558	1.00[ASN][1000 genomes]
rs58638187	1.00[ASN][1000 genomes]
rs58879825	1.00[ASN][1000 genomes]
rs59051993	1.00[ASN][1000 genomes]
rs59226844	1.00[ASN][1000 genomes]
rs59256404	1.00[ASN][1000 genomes]
rs60236002	1.00[ASN][1000 genomes]
rs60495201	1.00[ASN][1000 genomes]
rs60689248	0.89[ASN][1000 genomes]
rs61093643	1.00[ASN][1000 genomes]
rs61177686	1.00[ASN][1000 genomes]
rs61220073	1.00[ASN][1000 genomes]
rs61417607	1.00[ASN][1000 genomes]
rs61423679	1.00[ASN][1000 genomes]
rs61677732	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
2	chr3:23321600-23332600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:23325400-23334000	Weak transcription	Left Ventricle	heart
4	chr3:23328000-23334200	Weak transcription	Pancreas	Pancrea
5	chr3:23329200-23336600	Weak transcription	Primary B cells from cord blood	blood
6	chr3:23329600-23331800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:23330200-23331800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:23330200-23332000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:23330600-23331600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:23331000-23331600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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