Variant report

Variant	rs58282083
Chromosome Location	chr14:38766528-38766529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:38758479..38760563-chr14:38765715..38768374,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259072	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11851242	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12434326	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12587095	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12588255	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12588696	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1475516	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17107853	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17107886	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17107889	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17107897	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17107913	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1952555	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1952558	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1952559	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1952571	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1952572	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1958459	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1958460	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1958466	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1958498	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2183235	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2183237	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34197891	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34898807	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4898944	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4898959	0.86[EUR][1000 genomes]
rs4901844	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57009101	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57920839	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59648655	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60992447	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61975987	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61975988	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61975999	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7145965	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7147483	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7151822	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72683004	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003776	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8012584	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs928103	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs928104	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv533235	chr14:38558180-39117391	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832773	chr14:38612778-38785003	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530640	chr14:38702117-38927901	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38761600-38767000	Weak transcription	Fetal Lung	lung

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