Variant report

Variant	rs58301574
Chromosome Location	chr6:133291204-133291205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17062040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17062048	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17062051	0.96[ASN][1000 genomes]
rs41286192	1.00[AFR][1000 genomes]
rs4895947	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72556097	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133289600-133294400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:133290000-133291600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:133290400-133291400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:133290400-133291600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:133290400-133291600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:133290600-133291400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:133290600-133291400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:133290600-133293600	Weak transcription	Fetal Heart	heart
9	chr6:133290600-133294200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:133290800-133291600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:133291000-133291600	Enhancers	Fetal Muscle Leg	muscle
12	chr6:133291200-133294400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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