Variant report

Variant	rs583204
Chromosome Location	chr9:15299715-15299716
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15298408..15301257-chr9:15344895..15347811,2	MCF-7	breast:
2	chr9:15298942..15301605-chr9:15420446..15422025,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10810371	1.00[JPT][hapmap]
rs598631	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875255	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv613650	chr9:15296119-15378449	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv613651	chr9:15296355-15358157	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1015960	chr9:15296783-15380657	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv524849	chr9:15299590-15362057	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15287400-15303600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:15290800-15305600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:15290800-15306000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:15291200-15305600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:15294400-15306200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:15296600-15301200	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:15296800-15305600	Weak transcription	Left Ventricle	heart
8	chr9:15297000-15305200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr9:15297200-15300800	Enhancers	Primary hematopoietic stem cells	blood
10	chr9:15297200-15305600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:15297200-15305600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:15297200-15305600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:15297400-15300200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:15297400-15300200	Weak transcription	Spleen	Spleen
15	chr9:15297400-15304800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr9:15297400-15305200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr9:15297400-15305600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:15297400-15305600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:15297400-15305600	Weak transcription	NHEK	skin
20	chr9:15297400-15305600	Weak transcription	NHLF	lung
21	chr9:15297400-15306000	Weak transcription	HSMM	muscle
22	chr9:15297600-15299800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:15297600-15300000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:15297600-15300200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:15297600-15300200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:15297600-15300200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr9:15297600-15300200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:15297600-15300200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:15297600-15301000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:15297600-15301000	Strong transcription	Fetal Stomach	stomach
31	chr9:15297600-15304600	Weak transcription	Stomach Mucosa	stomach
32	chr9:15297600-15305200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr9:15297600-15305200	Weak transcription	HMEC	breast
34	chr9:15297600-15305400	Weak transcription	Fetal Lung	lung
35	chr9:15297600-15305400	Weak transcription	Osteobl	bone
36	chr9:15297600-15305600	Weak transcription	Adipose Nuclei	Adipose
37	chr9:15297600-15305600	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:15297600-15305600	Weak transcription	Esophagus	oesophagus
39	chr9:15297600-15305600	Weak transcription	Lung	lung
40	chr9:15297600-15305600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:15297600-15305800	Weak transcription	Gastric	stomach
42	chr9:15297600-15305800	Weak transcription	Right Atrium	heart
43	chr9:15297800-15304800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:15297800-15305600	Weak transcription	NHDF-Ad	bronchial
45	chr9:15297800-15306000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:15298000-15300600	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr9:15298000-15305400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr9:15298200-15299800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:15298200-15300400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr9:15298200-15305800	Weak transcription	Brain Angular Gyrus	brain

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