Variant report

Variant	rs58321909
Chromosome Location	chr7:48609321-48609322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 211 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs10254742	0.81[EUR][1000 genomes]
rs10256975	0.81[EUR][1000 genomes]
rs10499682	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10499683	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10499684	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11185608	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11185609	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12112361	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113920	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113960	0.98[ASN][1000 genomes]
rs12667982	0.81[ASN][1000 genomes]
rs12669930	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12669976	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12670340	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12671073	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12672551	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12673070	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12674031	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12674401	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12674424	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1316349	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1316821	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1317162	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13237819	0.81[ASN][1000 genomes]
rs1405920	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1433506	0.81[EUR][1000 genomes]
rs1527835	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527839	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1527840	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1609212	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1609213	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1609214	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17092931	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132335	0.81[EUR][1000 genomes]
rs17132373	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17132376	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17132383	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17132388	0.85[EUR][1000 genomes]
rs17132402	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17132417	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17132425	0.81[ASN][1000 genomes]
rs17132430	0.81[ASN][1000 genomes]
rs17132439	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132443	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132460	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132479	0.99[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132491	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918580	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918581	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918586	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918587	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918588	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918589	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918594	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1918595	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1918596	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918597	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918598	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918600	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1918601	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918602	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918606	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1918608	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918613	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2141251	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178086	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178087	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217710	0.81[EUR][1000 genomes]
rs2222731	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28481588	0.81[EUR][1000 genomes]
rs2885484	0.83[EUR][1000 genomes]
rs34252471	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4072501	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4072502	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4072503	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41332948	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144061	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4144063	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144064	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144067	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4144068	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4295610	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4296993	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4398852	0.93[ASN][1000 genomes]
rs4587280	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55650796	0.81[EUR][1000 genomes]
rs55735040	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55903755	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55974693	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56134922	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56205257	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56213942	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56232183	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56241442	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56393952	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56408667	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56798342	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56806901	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57226042	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57370511	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57401097	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57877708	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58043122	0.81[AMR][1000 genomes]
rs58054917	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58077564	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58433353	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58481134	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58486673	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58553345	0.81[EUR][1000 genomes]
rs58635193	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59100514	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59227959	0.81[ASN][1000 genomes]
rs59243715	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59549039	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59673264	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59872216	0.85[ASN][1000 genomes]
rs60184691	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60813775	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60918397	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61171557	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61310674	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61562434	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61602397	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61649354	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61706229	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583452	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583456	0.95[ASN][1000 genomes]
rs66501875	0.81[EUR][1000 genomes]
rs66522605	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66591834	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66729625	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66763020	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66785002	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66793444	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66898358	0.81[EUR][1000 genomes]
rs66909576	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67040412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67074321	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67081192	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67132562	0.81[EUR][1000 genomes]
rs67163301	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67187623	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67208890	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67223065	0.81[EUR][1000 genomes]
rs67249167	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67249859	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67294077	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67298249	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67316911	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67331245	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67370671	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67398358	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67744396	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67744565	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67748204	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67764854	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67845756	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67852079	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67875048	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67985903	0.85[EUR][1000 genomes]
rs68007434	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68029531	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68084496	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68110103	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68168969	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68179951	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6944801	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6954223	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6955102	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6957309	0.99[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6963717	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6966994	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6968069	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6970434	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6972202	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6972440	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6973231	0.81[EUR][1000 genomes]
rs6977997	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6980042	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6980069	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73094625	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73107574	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73109344	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73109355	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73109362	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73109364	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73109382	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73109385	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73109399	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73109401	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73111405	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7357308	0.81[EUR][1000 genomes]
rs7455877	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7457791	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7776966	0.81[ASN][1000 genomes]
rs7778895	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7781149	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7781150	0.85[EUR][1000 genomes]
rs7785069	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7791044	0.81[ASN][1000 genomes]
rs7792728	0.81[ASN][1000 genomes]
rs7797852	0.81[ASN][1000 genomes]
rs7804139	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7806480	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7807529	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810275	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9690617	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9691143	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9691391	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48600400-48634200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48606600-48618800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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