Variant report

Variant	rs58323797
Chromosome Location	chr8:63771189-63771190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11986494	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34300611	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55859915	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56139433	1.00[AMR][1000 genomes]
rs56341071	1.00[AMR][1000 genomes]
rs56678461	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57335101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57834913	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60134196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61145974	0.85[AFR][1000 genomes]
rs73683198	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683239	0.85[AFR][1000 genomes]
rs73683240	1.00[AMR][1000 genomes]
rs73683241	0.85[AFR][1000 genomes]
rs73683426	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683428	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683964	1.00[AMR][1000 genomes]
rs73685427	1.00[AMR][1000 genomes]
rs73685430	1.00[AMR][1000 genomes]
rs73685431	1.00[AMR][1000 genomes]
rs73685432	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685433	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685434	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685435	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685437	1.00[AMR][1000 genomes]
rs73685442	1.00[AMR][1000 genomes]
rs73685445	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685512	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685515	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685517	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685818	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685819	1.00[AMR][1000 genomes]
rs73685820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv890961	chr8:63708519-63773787	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63759000-63776400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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