Variant report

Variant	rs58333554
Chromosome Location	chr19:36910208-36910209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NRF1	chr19:36909231-36910321	SK-N-SH	brain:	n/a	chr19:36909596-36909605 chr19:36909596-36909610 chr19:36909593-36909607 chr19:36909596-36909607
2	RCOR1	chr19:36908014-36910259	IMR90	lung:	n/a	n/a
3	HCFC1	chr19:36908888-36910378	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000267142	TF binding region
ZFP82	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17206365	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17206372	0.98[ASN][1000 genomes]
rs57488812	0.81[EUR][1000 genomes]
rs58192477	0.80[EUR][1000 genomes]
rs62112627	0.81[EUR][1000 genomes]
rs62112629	0.81[EUR][1000 genomes]
rs62112634	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73043854	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8111845	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8113638	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1067101	chr19:36901010-36956251	ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36908800-36910400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:36908800-36910400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:36909000-36910400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:36909200-36910400	Active TSS	Fetal Brain Female	brain
5	chr19:36909800-36910400	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr19:36909800-36912000	Weak transcription	Spleen	Spleen
7	chr19:36910000-36910400	Enhancers	Primary B cells from peripheral blood	blood
8	chr19:36910000-36910400	Weak transcription	Fetal Stomach	stomach
9	chr19:36910000-36910400	Flanking Active TSS	Dnd41	blood
10	chr19:36910000-36912000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr19:36910000-36912000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:36910000-36912000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:36910000-36912000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr19:36910000-36912000	Weak transcription	Gastric	stomach
15	chr19:36910000-36912000	Weak transcription	Lung	lung
16	chr19:36910000-36912000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr19:36910000-36912000	Weak transcription	Psoas Muscle	Psoas
18	chr19:36910000-36912000	Weak transcription	Right Atrium	heart
19	chr19:36910000-36912000	Weak transcription	Right Ventricle	heart
20	chr19:36910000-36912000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr19:36910000-36912000	Weak transcription	HUVEC	blood vessel
22	chr19:36910000-36912200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr19:36910000-36912200	Weak transcription	Aorta	Aorta
24	chr19:36910000-36912200	Weak transcription	Colonic Mucosa	Colon
25	chr19:36910000-36912200	Weak transcription	Left Ventricle	heart
26	chr19:36910000-36912200	Weak transcription	Ovary	ovary
27	chr19:36910000-36912200	Weak transcription	Pancreas	Pancrea
28	chr19:36910000-36912400	Weak transcription	Esophagus	oesophagus
29	chr19:36910200-36910400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr19:36910200-36910400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:36910200-36910400	Enhancers	Fetal Heart	heart
32	chr19:36910200-36910400	Enhancers	Stomach Smooth Muscle	stomach
33	chr19:36910200-36911000	Enhancers	HepG2	liver
34	chr19:36910200-36911600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:36910200-36911800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr19:36910200-36912000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:36910200-36912000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr19:36910200-36912000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr19:36910200-36912000	Weak transcription	Brain Angular Gyrus	brain
40	chr19:36910200-36912000	Weak transcription	Brain Anterior Caudate	brain
41	chr19:36910200-36912000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr19:36910200-36912000	Weak transcription	Brain Hippocampus Middle	brain
43	chr19:36910200-36912000	Weak transcription	Brain Substantia Nigra	brain
44	chr19:36910200-36912000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr19:36910200-36912000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr19:36910200-36912000	Weak transcription	Placenta	Placenta
47	chr19:36910200-36912000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr19:36910200-36912000	Weak transcription	Osteobl	bone
49	chr19:36910200-36912200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr19:36910200-36912200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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