Variant report

Variant	rs58336468
Chromosome Location	chr1:172686335-172686336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172575736..172579106-chr1:172685787..172690333,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2565396	chr1:172685443-172686827	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2127331	chr1:172685983-172686672	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3320819	chr1:172686066-172686586	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3523188	chr1:172686081-172686574	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3523191	chr1:172686092-172686566	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3523189	chr1:172686101-172686514	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3320821	chr1:172686107-172686552	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3320817	chr1:172686114-172686547	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3523192	chr1:172686119-172686540	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3320816	chr1:172686123-172686505	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3320820	chr1:172686153-172686484	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3523190	chr1:172686163-172686498	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3320822	chr1:172686167-172686496	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3523193	chr1:172686167-172686496	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172683400-172689200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:172684000-172688000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:172684000-172688400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:172684000-172689000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:172684000-172692400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:172685000-172686800	Enhancers	Fetal Heart	heart
7	chr1:172685000-172690400	Enhancers	Placenta	Placenta
8	chr1:172685400-172686800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:172685400-172687200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:172685400-172687400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:172685400-172687400	Enhancers	HepG2	liver
12	chr1:172685400-172687600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:172685400-172689200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:172685600-172687000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:172685600-172687000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:172685800-172686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:172685800-172689000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr1:172685800-172689000	Weak transcription	Left Ventricle	heart
19	chr1:172686000-172686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:172686000-172686600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:172686000-172687000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:172686000-172687000	Weak transcription	HMEC	breast
23	chr1:172686000-172687800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:172686000-172688400	Enhancers	Fetal Intestine Large	intestine
25	chr1:172686000-172688600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr1:172686000-172688600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:172686000-172688600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr1:172686000-172693600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:172686200-172686600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:172686200-172686600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr1:172686200-172686600	Weak transcription	NHEK	skin
32	chr1:172686200-172686600	Weak transcription	Osteobl	bone
33	chr1:172686200-172687000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr1:172686200-172688400	Weak transcription	Dnd41	blood
35	chr1:172686200-172693800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr1:172686200-172693800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr1:172686200-172693800	Weak transcription	Fetal Thymus	thymus

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