Variant report

Variant	rs58347983
Chromosome Location	chr8:64210572-64210573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4270960	1.00[EUR][1000 genomes]
rs57317205	1.00[EUR][1000 genomes]
rs58136897	1.00[EUR][1000 genomes]
rs58523545	1.00[EUR][1000 genomes]
rs61143666	1.00[EUR][1000 genomes]
rs61144659	1.00[EUR][1000 genomes]
rs6472082	1.00[EUR][1000 genomes]
rs6981955	1.00[EUR][1000 genomes]
rs7000002	1.00[EUR][1000 genomes]
rs7014890	1.00[EUR][1000 genomes]
rs73254921	1.00[EUR][1000 genomes]
rs73254933	1.00[EUR][1000 genomes]
rs73254954	1.00[EUR][1000 genomes]
rs73256855	1.00[EUR][1000 genomes]
rs7833923	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831342	chr8:64084331-64294941	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv890968	chr8:64198880-64227872	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64202200-64211200	Weak transcription	Brain Germinal Matrix	brain
2	chr8:64207600-64211000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:64209000-64212400	Enhancers	Fetal Intestine Large	intestine
4	chr8:64209200-64210600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:64209400-64212400	Enhancers	Fetal Intestine Small	intestine
6	chr8:64209600-64211600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:64209800-64210600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:64209800-64211600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:64209800-64212000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:64209800-64212000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:64209800-64212800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:64210000-64211000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:64210400-64211400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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