Variant report

Variant	rs58354969
Chromosome Location	chr7:19673467-19673468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17141796	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2390154	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735616	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58056591	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60221291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60983452	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60986520	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61052896	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66483938	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs66857203	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67008311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67320494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67480144	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs67667438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67685641	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6946719	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73076839	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270117	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73271905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73271979	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73272001	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274010	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274011	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274016	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274017	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274019	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274023	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274032	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274033	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274035	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73274039	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9690343	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv8068	chr7:19618846-19682421	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19673200-19673600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr7:19673200-19673600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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