Variant report

Variant	rs583589
Chromosome Location	chr11:56313378-56313379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10400288	0.94[ASN][1000 genomes]
rs10736677	0.97[ASN][1000 genomes]
rs10750820	0.94[ASN][1000 genomes]
rs10792040	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792043	0.91[ASN][1000 genomes]
rs10896480	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11228212	0.94[ASN][1000 genomes]
rs11228684	0.88[ASN][1000 genomes]
rs11228686	0.88[ASN][1000 genomes]
rs11228687	0.88[ASN][1000 genomes]
rs11228693	0.82[ASN][1000 genomes]
rs11228694	0.82[ASN][1000 genomes]
rs11228698	0.82[ASN][1000 genomes]
rs11228701	0.82[ASN][1000 genomes]
rs11228706	0.82[ASN][1000 genomes]
rs11228708	0.82[ASN][1000 genomes]
rs12222989	0.82[ASN][1000 genomes]
rs12418150	0.91[ASN][1000 genomes]
rs12418301	0.88[ASN][1000 genomes]
rs1605924	0.88[ASN][1000 genomes]
rs17150739	1.00[ASN][1000 genomes]
rs1945196	1.00[ASN][1000 genomes]
rs1945210	0.94[ASN][1000 genomes]
rs2202932	0.88[ASN][1000 genomes]
rs2511143	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2865516	0.82[ASN][1000 genomes]
rs3938998	0.94[ASN][1000 genomes]
rs4500505	1.00[ASN][1000 genomes]
rs4939034	0.88[ASN][1000 genomes]
rs4939035	0.88[ASN][1000 genomes]
rs4939043	0.94[ASN][1000 genomes]
rs4939061	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs584608	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588805	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs592744	1.00[ASN][1000 genomes]
rs596212	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61710550	0.82[ASN][1000 genomes]
rs637912	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642630	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643384	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs654634	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655779	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs656565	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591381	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs676901	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939886	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56312800-56313400	Enhancers	Rectal Mucosa Donor 31	rectum

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