The 2.0 version of rSNPBase

Variant report

Variant rs58394161
Chromosome Location chr1:92939959-92939960
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92925600-92946000 Weak transcription Right Atrium heart
2 chr1:92929400-92940600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr1:92929600-92940800 Weak transcription Duodenum Mucosa Duodenum
4 chr1:92930800-92944400 Weak transcription Spleen Spleen
5 chr1:92933400-92941200 Weak transcription Primary T cells from cord blood blood
6 chr1:92936400-92940600 Weak transcription HepG2 liver
7 chr1:92936600-92940600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:92938000-92940800 Genic enhancers Dnd41 blood
9 chr1:92938200-92940800 Genic enhancers Fetal Thymus thymus
10 chr1:92938600-92940200 Strong transcription Primary hematopoietic stem cells short term culture blood
11 chr1:92938800-92943800 Enhancers Primary T killer memory cells from peripheral blood blood
12 chr1:92939000-92940000 Enhancers Primary T cells fromperipheralblood blood
13 chr1:92939000-92940600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr1:92939000-92941200 Enhancers Primary T regulatory cells fromperipheralblood blood
15 chr1:92939000-92944600 Enhancers Primary T helper naive cells fromperipheralblood blood
16 chr1:92939200-92942600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
17 chr1:92939200-92943600 Enhancers GM12878-XiMat blood
18 chr1:92939400-92940800 Enhancers Primary T helper 17 cells PMA-I stimulated --
19 chr1:92939400-92941200 Genic enhancers Primary T helper cells PMA-I stimulated --
20 chr1:92939400-92943600 Enhancers Primary T helper cells fromperipheralblood blood
21 chr1:92939400-92944600 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:92939400-92945800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr1:92939600-92940600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:92939600-92941800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:92939600-92941800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:92939600-92942200 Enhancers Primary hematopoietic stem cells blood
27 chr1:92939600-92944600 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:92939800-92940000 Bivalent Enhancer H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr1:92939800-92940000 Enhancers Monocytes-CD14+_RO01746 blood
30 chr1:92939800-92940800 Weak transcription Pancreas Pancrea
31 chr1:92939800-92941000 Genic enhancers Thymus Thymus
32 chr1:92939800-92941600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr1:92939800-92941800 Enhancers Primary neutrophils fromperipheralblood blood
34 chr1:92939800-92943600 Enhancers Primary T helper naive cells from peripheral blood blood
35 chr1:92939800-92945200 Enhancers Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015