Variant report
| Variant | rs58400094 |
|---|---|
| Chromosome Location | chr15:78255723-78255724 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TBC1D2B-1 | chr15:78255696-78255996 | ENSG00000261403.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11852882 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11853677 | 1.00[AMR][1000 genomes] |
| rs11854277 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11858739 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13329641 | 1.00[AMR][1000 genomes] |
| rs28544503 | 1.00[AMR][1000 genomes] |
| rs28588665 | 1.00[AMR][1000 genomes] |
| rs28696266 | 1.00[AMR][1000 genomes] |
| rs56875053 | 1.00[AMR][1000 genomes] |
| rs57128446 | 1.00[AMR][1000 genomes] |
| rs57309564 | 1.00[AMR][1000 genomes] |
| rs57442101 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58710415 | 1.00[AMR][1000 genomes] |
| rs60777884 | 1.00[AMR][1000 genomes] |
| rs60880256 | 1.00[AMR][1000 genomes] |
| rs61085022 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1806097 | chr15:77817889-78301377 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv529491 | chr15:77932659-78751516 | Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
| 3 | esv1833316 | chr15:78081307-78328108 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv904426 | chr15:78090630-78264164 | Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 5 | nsv976954 | chr15:78153346-78255825 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:78252200-78256800 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
