Variant report

Variant	rs58410484
Chromosome Location	chr1:94196349-94196350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94146957..94149013-chr1:94194434..94197028,2	MCF-7	breast:
2	chr1:94194863..94197448-chr1:94201555..94203436,2	K562	blood:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1108527	0.93[ASN][1000 genomes]
rs1108528	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11164994	0.82[AMR][1000 genomes]
rs1467129	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61781048	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61781051	0.94[AMR][1000 genomes]
rs61781054	0.91[AMR][1000 genomes]
rs61781055	0.91[AMR][1000 genomes]
rs61781056	0.91[AMR][1000 genomes]
rs6674149	0.91[AMR][1000 genomes]
rs72721074	0.90[ASN][1000 genomes]
rs72723138	0.91[AMR][1000 genomes]
rs871436	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58410484	GCLM	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94188000-94198400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:94188800-94198400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:94189000-94200000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:94189400-94197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:94189600-94198200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:94190000-94196600	Weak transcription	Hela-S3	cervix
7	chr1:94190000-94199000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:94190200-94198200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:94190400-94199000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:94190600-94200800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:94193000-94198000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:94193400-94198000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:94193600-94196600	Enhancers	Fetal Muscle Leg	muscle
14	chr1:94193800-94198200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:94194000-94196600	Enhancers	GM12878-XiMat	blood
16	chr1:94194000-94198000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr1:94194400-94197000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:94194400-94197400	Weak transcription	Right Atrium	heart
19	chr1:94194800-94197400	Weak transcription	Adipose Nuclei	Adipose
20	chr1:94195200-94196400	Weak transcription	Spleen	Spleen
21	chr1:94195200-94196600	Enhancers	Fetal Lung	lung
22	chr1:94195200-94196600	Enhancers	Lung	lung
23	chr1:94195200-94197800	Enhancers	Placenta	Placenta
24	chr1:94195400-94199200	Weak transcription	Brain Angular Gyrus	brain
25	chr1:94195600-94198000	Enhancers	NHEK	skin
26	chr1:94195800-94196400	Enhancers	Brain Hippocampus Middle	brain
27	chr1:94195800-94196400	Enhancers	Brain Substantia Nigra	brain
28	chr1:94195800-94196600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:94195800-94196600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:94195800-94197400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:94195800-94198000	Enhancers	HMEC	breast
32	chr1:94195800-94199000	Enhancers	Fetal Thymus	thymus
33	chr1:94196000-94197000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:94196000-94197400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:94196000-94197400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr1:94196200-94200600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:94196200-94205800	Weak transcription	Brain Inferior Temporal Lobe	brain

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