Variant report

Variant	rs58421205
Chromosome Location	chr3:155584262-155584263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11914419	1.00[AMR][1000 genomes]
rs11922468	1.00[AMR][1000 genomes]
rs11922696	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs11924959	1.00[AMR][1000 genomes]
rs11928132	1.00[AMR][1000 genomes]
rs16825644	1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59555928	1.00[AMR][1000 genomes]
rs59649523	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs60579449	1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73007026	1.00[AMR][1000 genomes]
rs73007035	1.00[AMR][1000 genomes]
rs73009121	1.00[AMR][1000 genomes]
rs73011111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011129	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011200	1.00[AMR][1000 genomes]
rs73012911	1.00[AMR][1000 genomes]
rs73012929	1.00[AMR][1000 genomes]
rs73012940	1.00[AMR][1000 genomes]
rs73012954	1.00[AMR][1000 genomes]
rs73014850	1.00[AMR][1000 genomes]
rs73018956	1.00[AMR][1000 genomes]
rs73018983	1.00[AMR][1000 genomes]
rs73018986	1.00[AMR][1000 genomes]
rs73018995	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs7641442	1.00[AMR][1000 genomes]
rs7645121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155575800-155587400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:155580600-155587400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:155580800-155587600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:155581000-155587600	Weak transcription	Fetal Thymus	thymus
5	chr3:155581200-155587200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:155581600-155585000	Weak transcription	HepG2	liver
7	chr3:155582000-155587000	Weak transcription	K562	blood
8	chr3:155584200-155587600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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