Variant report

Variant	rs58444973
Chromosome Location	chr9:72199499-72199500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72198561..72201116-chr9:72205878..72207439,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11139526	1.00[AMR][1000 genomes]
rs12336988	1.00[AMR][1000 genomes]
rs57840127	1.00[AMR][1000 genomes]
rs58330455	1.00[AMR][1000 genomes]
rs59971271	1.00[AMR][1000 genomes]
rs73443764	1.00[AMR][1000 genomes]
rs73443775	1.00[AMR][1000 genomes]
rs73443780	1.00[AMR][1000 genomes]
rs73443781	1.00[AMR][1000 genomes]
rs73443790	1.00[AMR][1000 genomes]
rs73447315	1.00[AMR][1000 genomes]
rs73449410	1.00[AMR][1000 genomes]
rs73449429	1.00[AMR][1000 genomes]
rs73449430	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
3	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:72193200-72204400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:72193400-72200200	Weak transcription	Right Ventricle	heart
6	chr9:72195400-72200400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:72195400-72200600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:72195800-72208200	Weak transcription	Fetal Lung	lung
9	chr9:72196000-72204800	Weak transcription	Fetal Brain Male	brain
10	chr9:72196200-72204800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:72196400-72201000	Enhancers	HUVEC	blood vessel
12	chr9:72197200-72201000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:72198200-72199800	Weak transcription	NHEK	skin
14	chr9:72198600-72200800	Enhancers	NHDF-Ad	bronchial
15	chr9:72198800-72199600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr9:72198800-72200400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:72199000-72204200	Weak transcription	Brain Germinal Matrix	brain
18	chr9:72199200-72200000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:72199200-72200400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:72199200-72200600	Enhancers	NH-A	brain
21	chr9:72199400-72199600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:72199400-72200200	Weak transcription	Fetal Heart	heart
23	chr9:72199400-72200600	Enhancers	Osteobl	bone

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