The 2.0 version of rSNPBase

Variant report

Variant rs58447746
Chromosome Location chr2:33523302-33523303
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:33492400-33547400 Weak transcription Fetal Intestine Small intestine
2 chr2:33501200-33528800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr2:33502600-33537000 Weak transcription Fetal Intestine Large intestine
4 chr2:33505000-33526200 Weak transcription Placenta Placenta
5 chr2:33507000-33528600 Weak transcription Fetal Muscle Trunk muscle
6 chr2:33517000-33524600 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr2:33517000-33525400 Weak transcription Right Ventricle heart
8 chr2:33517000-33526600 Weak transcription Fetal Stomach stomach
9 chr2:33517000-33528800 Weak transcription Psoas Muscle Psoas
10 chr2:33517000-33529200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr2:33517000-33529400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr2:33517000-33529600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr2:33517200-33525800 Weak transcription Liver Liver
14 chr2:33517200-33533000 Weak transcription Brain Substantia Nigra brain
15 chr2:33517200-33533200 Weak transcription Brain Inferior Temporal Lobe brain
16 chr2:33517200-33537400 Weak transcription Fetal Brain Male brain
17 chr2:33517200-33545000 Weak transcription Fetal Kidney kidney
18 chr2:33517200-33545800 Weak transcription Fetal Lung lung
19 chr2:33517200-33546400 Weak transcription Brain Angular Gyrus brain
20 chr2:33517600-33532600 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr2:33517600-33532800 Weak transcription Brain Anterior Caudate brain
22 chr2:33517800-33543400 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr2:33520800-33523400 Enhancers Breast Myoepithelial Primary Cells Breast
24 chr2:33521000-33523400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
25 chr2:33521000-33523600 Enhancers Skeletal Muscle Female skeletal muscle
26 chr2:33521400-33523600 Enhancers Skeletal Muscle Male skeletal muscle
27 chr2:33521400-33525400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr2:33521600-33523400 Enhancers Ovary ovary
29 chr2:33521800-33525800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr2:33522000-33523400 Enhancers Adipose Nuclei Adipose
31 chr2:33522000-33523400 Enhancers Fetal Adrenal Gland Adrenal Gland
32 chr2:33522000-33523600 Enhancers Rectal Smooth Muscle rectum
33 chr2:33522000-33523800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
34 chr2:33522000-33523800 Enhancers Colon Smooth Muscle Colon
35 chr2:33522200-33523400 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr2:33522200-33523800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr2:33522200-33526200 Weak transcription Stomach Smooth Muscle stomach
38 chr2:33522400-33524000 Enhancers NH-A brain
39 chr2:33522400-33527200 Weak transcription Fetal Muscle Leg muscle
40 chr2:33522600-33523600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr2:33522600-33523800 Enhancers Fetal Heart heart
42 chr2:33522800-33523600 Enhancers Duodenum Smooth Muscle Duodenum
43 chr2:33522800-33523600 Enhancers K562 blood
44 chr2:33522800-33523600 Enhancers NHDF-Ad bronchial
45 chr2:33522800-33523800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr2:33522800-33523800 Enhancers Muscle Satellite Cultured Cells --
47 chr2:33522800-33523800 Enhancers Osteobl bone
48 chr2:33522800-33524000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr2:33522800-33524200 Enhancers HSMMtube muscle
50 chr2:33522800-33525400 Weak transcription Left Ventricle heart

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015