Variant report

Variant	rs58454714
Chromosome Location	chr8:94964514-94964515
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs3115916	0.89[EUR][1000 genomes]
rs3115917	0.89[EUR][1000 genomes]
rs3115918	0.89[EUR][1000 genomes]
rs3115919	0.89[EUR][1000 genomes]
rs3115921	0.89[EUR][1000 genomes]
rs3115925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115926	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3115936	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115937	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115941	1.00[EUR][1000 genomes]
rs3115946	0.94[EUR][1000 genomes]
rs3133986	0.89[EUR][1000 genomes]
rs3133988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133997	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3133998	0.90[EUR][1000 genomes]
rs3133999	1.00[EUR][1000 genomes]
rs3134000	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134001	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134002	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134003	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134004	1.00[EUR][1000 genomes]
rs3134005	1.00[EUR][1000 genomes]
rs3134006	1.00[EUR][1000 genomes]
rs3134007	1.00[EUR][1000 genomes]
rs3134008	1.00[EUR][1000 genomes]
rs3134009	1.00[EUR][1000 genomes]
rs3134011	1.00[EUR][1000 genomes]
rs3134013	1.00[EUR][1000 genomes]
rs3134016	0.94[EUR][1000 genomes]
rs55691744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55914182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58866863	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59023505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59797932	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61294318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61467536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61495155	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61708878	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522989	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62523005	0.94[EUR][1000 genomes]
rs62523006	0.94[EUR][1000 genomes]
rs62523009	0.94[EUR][1000 genomes]
rs62523010	0.94[EUR][1000 genomes]
rs62523011	0.94[EUR][1000 genomes]
rs62523014	0.89[EUR][1000 genomes]
rs62523015	0.89[EUR][1000 genomes]
rs62523016	0.89[EUR][1000 genomes]
rs6983462	0.83[EUR][1000 genomes]
rs6989092	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6997830	0.89[EUR][1000 genomes]
rs7006289	0.89[EUR][1000 genomes]
rs7836063	0.89[EUR][1000 genomes]
rs7840040	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94963800-94965000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:94964400-94966000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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