Variant report

Variant	rs58458032
Chromosome Location	chr14:70222729-70222730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70219066..70223141-chr14:70232527..70235246,6	MCF-7	breast:
2	chr14:70215666..70217625-chr14:70221053..70222945,2	K562	blood:
3	chr14:70221981..70224233-chr14:70227163..70228798,2	K562	blood:
4	chr14:70209618..70212436-chr14:70221216..70223040,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1958085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55663855	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60401303	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61343418	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283349	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285211	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74060546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70218800-70223400	Enhancers	HepG2	liver
2	chr14:70220800-70223600	Enhancers	Fetal Intestine Large	intestine
3	chr14:70221000-70223600	Enhancers	Fetal Intestine Small	intestine
4	chr14:70221000-70227200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr14:70221200-70223000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:70221200-70223400	Enhancers	K562	blood
7	chr14:70222000-70222800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr14:70222000-70222800	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr14:70222000-70223000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:70222000-70223000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr14:70222000-70223000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:70222000-70223000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr14:70222000-70223200	Enhancers	Primary T cells from cord blood	blood
14	chr14:70222000-70223200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr14:70222000-70223200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr14:70222000-70223200	Enhancers	Stomach Mucosa	stomach
17	chr14:70222000-70223400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr14:70222000-70223400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:70222000-70223400	Enhancers	Duodenum Mucosa	Duodenum
20	chr14:70222000-70223400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr14:70222200-70222800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr14:70222200-70223000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:70222200-70223000	Enhancers	Small Intestine	intestine
24	chr14:70222200-70223200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:70222400-70222800	Enhancers	Pancreas	Pancrea
26	chr14:70222400-70223000	Enhancers	Placenta	Placenta
27	chr14:70222400-70233000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:70222600-70222800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr14:70222600-70227400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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