Variant report

Variant	rs584608
Chromosome Location	chr11:56313101-56313102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:56312999-56313268	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
OR5M11	TF binding region

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10400288	0.90[ASN][1000 genomes]
rs10501354	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10736676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10736677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs10736678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10750820	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10792038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10792039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10792040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[ASN][1000 genomes]
rs10896480	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11228212	0.88[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11228641	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228673	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11228676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11228684	0.84[ASN][1000 genomes]
rs11228686	0.84[ASN][1000 genomes]
rs11228687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11228693	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228706	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228708	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228759	0.91[JPT][hapmap]
rs11228760	0.91[JPT][hapmap]
rs11228763	0.91[JPT][hapmap]
rs12223492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12418150	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12418301	0.84[ASN][1000 genomes]
rs1473592	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1605924	0.84[ASN][1000 genomes]
rs17150739	0.96[ASN][1000 genomes]
rs1945196	0.96[ASN][1000 genomes]
rs1945206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1945210	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1945261	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1945263	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1945282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2202932	0.84[ASN][1000 genomes]
rs2511143	0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2865516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs33995115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3938998	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4500505	0.96[ASN][1000 genomes]
rs4939034	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4939035	0.84[ASN][1000 genomes]
rs4939043	0.90[ASN][1000 genomes]
rs4939061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4939065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4939066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs583216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs583589	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588805	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs592744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs596212	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs597680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs600187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs611397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs614942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs628524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs637912	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs642630	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs643384	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs645351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs646286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs654634	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs655779	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs656565	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6591323	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6591381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs674431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs676901	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7924528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7928704	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7939886	0.96[ASN][1000 genomes]
rs971758	1.00[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56312800-56313400	Enhancers	Rectal Mucosa Donor 31	rectum

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