Variant report

Variant	rs58467507
Chromosome Location	chr1:195689407-195689408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12061613	1.00[EUR][1000 genomes]
rs16838961	1.00[EUR][1000 genomes]
rs56742030	1.00[EUR][1000 genomes]
rs57057259	1.00[EUR][1000 genomes]
rs59718710	1.00[EUR][1000 genomes]
rs6658165	1.00[EUR][1000 genomes]
rs6676482	1.00[EUR][1000 genomes]
rs6690674	1.00[EUR][1000 genomes]
rs73056343	1.00[EUR][1000 genomes]
rs73056346	1.00[EUR][1000 genomes]
rs73056348	1.00[EUR][1000 genomes]
rs73056357	1.00[EUR][1000 genomes]
rs73060547	1.00[EUR][1000 genomes]
rs73060549	1.00[EUR][1000 genomes]
rs73060550	1.00[EUR][1000 genomes]
rs73060553	1.00[EUR][1000 genomes]
rs73060560	1.00[EUR][1000 genomes]
rs73060569	1.00[EUR][1000 genomes]
rs73060572	1.00[EUR][1000 genomes]
rs73065150	1.00[EUR][1000 genomes]
rs73068324	1.00[EUR][1000 genomes]
rs73071004	1.00[EUR][1000 genomes]
rs73071007	1.00[EUR][1000 genomes]
rs73071048	1.00[EUR][1000 genomes]
rs73071050	1.00[EUR][1000 genomes]
rs73071052	1.00[EUR][1000 genomes]
rs73071054	1.00[EUR][1000 genomes]
rs73071058	1.00[EUR][1000 genomes]
rs74135147	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009307	chr1:195368381-195726703	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv947460	chr1:195646625-195689578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195686800-195689600	Weak transcription	NHDF-Ad	bronchial
2	chr1:195689000-195689800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr1:195689200-195689600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:195689400-195692000	Active TSS	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links