Variant report

Variant	rs58469352
Chromosome Location	chr6:13070552-13070553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11970697	1.00[ASN][1000 genomes]
rs58613497	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6903869	1.00[ASN][1000 genomes]
rs6910939	1.00[ASN][1000 genomes]
rs73368123	1.00[ASN][1000 genomes]
rs73368142	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368147	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368149	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368163	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368165	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368168	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368172	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368175	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368177	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368182	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368194	1.00[ASN][1000 genomes]
rs73368196	1.00[ASN][1000 genomes]
rs73368197	1.00[ASN][1000 genomes]
rs73369823	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9473446	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13039400-13071600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:13054400-13071800	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:13054800-13074600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:13055200-13073000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:13055200-13076400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:13059200-13077600	Weak transcription	Lung	lung
7	chr6:13066200-13071800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:13066800-13072200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:13067000-13073000	Enhancers	Brain Anterior Caudate	brain
10	chr6:13067400-13071600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:13067400-13075800	Weak transcription	Pancreas	Pancrea
12	chr6:13068000-13071000	Enhancers	Fetal Heart	heart
13	chr6:13069000-13071000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:13069200-13071600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:13069200-13072400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:13069600-13070800	Enhancers	Left Ventricle	heart
17	chr6:13069600-13071000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:13069800-13071600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:13069800-13071600	Weak transcription	NHDF-Ad	bronchial
20	chr6:13069800-13082200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:13070000-13071600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:13070200-13070800	Enhancers	Right Ventricle	heart
23	chr6:13070400-13077800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links