Variant report

Variant	rs584720
Chromosome Location	chr1:225427066-225427067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1067206	0.89[ASN][1000 genomes]
rs10799296	0.91[ASN][1000 genomes]
rs10915791	0.89[ASN][1000 genomes]
rs10915797	0.92[ASN][1000 genomes]
rs10915798	0.92[ASN][1000 genomes]
rs10915802	0.92[ASN][1000 genomes]
rs10915803	0.92[ASN][1000 genomes]
rs10915806	0.88[ASN][1000 genomes]
rs12064555	0.90[ASN][1000 genomes]
rs12068189	0.90[ASN][1000 genomes]
rs12068193	0.90[ASN][1000 genomes]
rs12077485	0.92[ASN][1000 genomes]
rs12077966	0.89[ASN][1000 genomes]
rs12090119	0.89[ASN][1000 genomes]
rs12097990	0.92[ASN][1000 genomes]
rs12728007	0.92[ASN][1000 genomes]
rs12733733	0.90[ASN][1000 genomes]
rs12740067	0.84[JPT][hapmap]
rs12754230	0.92[ASN][1000 genomes]
rs12759119	0.84[JPT][hapmap]
rs1480101	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1480107	0.90[ASN][1000 genomes]
rs1604777	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs16844602	0.84[JPT][hapmap]
rs1842332	0.84[JPT][hapmap]
rs2035302	0.89[ASN][1000 genomes]
rs34248528	0.92[ASN][1000 genomes]
rs4653608	0.90[ASN][1000 genomes]
rs4653610	0.90[ASN][1000 genomes]
rs56332582	0.90[ASN][1000 genomes]
rs581675	0.84[JPT][hapmap]
rs582720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs583098	0.89[JPT][hapmap]
rs585470	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585546	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590744	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs596036	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs599355	0.83[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61851476	0.85[ASN][1000 genomes]
rs61851519	0.92[ASN][1000 genomes]
rs621210	0.93[ASN][1000 genomes]
rs625391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs625428	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs633544	0.92[ASN][1000 genomes]
rs634342	0.92[ASN][1000 genomes]
rs634895	0.92[ASN][1000 genomes]
rs635851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs638371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs638672	0.84[JPT][hapmap]
rs655529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs662897	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666735	0.89[ASN][1000 genomes]
rs669326	0.92[ASN][1000 genomes]
rs6693785	0.92[ASN][1000 genomes]
rs672951	0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.82[MKK][hapmap]
rs673897	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs674025	0.92[ASN][1000 genomes]
rs686493	0.84[JPT][hapmap]
rs712060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs712061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71646708	0.91[ASN][1000 genomes]
rs7536245	0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7541259	0.92[ASN][1000 genomes]
rs7555756	0.92[ASN][1000 genomes]
rs785383	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9887766	0.90[ASN][1000 genomes]
rs9887975	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv468205	chr1:225304971-225476025	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549264	chr1:225304971-225476025	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv945672	chr1:225339532-225561349	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv873226	chr1:225347689-225555602	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv832703	chr1:225375953-225520216	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1014968	chr1:225389490-225459008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv1005481	chr1:225389490-225462887	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	nsv997904	chr1:225389490-225466637	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1002430	chr1:225389490-225471683	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv2762171	chr1:225390933-225463772	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	nsv549265	chr1:225395959-225462346	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	esv1805729	chr1:225404951-225526778	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2757774	chr1:225404951-225526778	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv2759002	chr1:225404951-225526778	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv428312	chr1:225404951-225526778	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225426200-225427200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:225426800-225430600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:225427000-225427400	Enhancers	Pancreas	Pancrea

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