Variant report

Variant	rs58475782
Chromosome Location	chr1:160846273-160846274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57704705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60513470	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517509	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012053	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012079	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012091	1.00[AMR][1000 genomes]
rs73020000	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020001	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021996	1.00[AMR][1000 genomes]
rs73022002	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023905	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023999	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024002	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025715	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025723	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029710	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029740	0.81[AFR][1000 genomes]
rs73029742	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029751	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160832600-160847400	Weak transcription	Spleen	Spleen
2	chr1:160834600-160849000	Weak transcription	Ovary	ovary
3	chr1:160835400-160846400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:160840800-160846600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:160844000-160846800	Enhancers	Fetal Intestine Small	intestine
6	chr1:160844400-160847600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:160844600-160846800	Enhancers	Fetal Intestine Large	intestine
8	chr1:160845400-160847200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:160846000-160847200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:160846000-160847400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:160846000-160847400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:160846000-160847400	Enhancers	Monocytes-CD14+_RO01746	blood

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