Variant report

Variant	rs58477298
Chromosome Location	chr2:11573104-11573105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11572499..11575442-chr2:11621165..11623225,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10183250	1.00[EUR][1000 genomes]
rs10803734	1.00[EUR][1000 genomes]
rs13420559	1.00[EUR][1000 genomes]
rs13421766	1.00[EUR][1000 genomes]
rs13424731	1.00[EUR][1000 genomes]
rs16857649	1.00[EUR][1000 genomes]
rs16857699	1.00[EUR][1000 genomes]
rs4668728	1.00[EUR][1000 genomes]
rs4669732	1.00[EUR][1000 genomes]
rs4669734	1.00[EUR][1000 genomes]
rs56239196	1.00[EUR][1000 genomes]
rs56252168	1.00[EUR][1000 genomes]
rs56273175	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56834951	1.00[EUR][1000 genomes]
rs57251854	1.00[EUR][1000 genomes]
rs58819315	1.00[EUR][1000 genomes]
rs59554925	1.00[EUR][1000 genomes]
rs60798771	1.00[EUR][1000 genomes]
rs61091666	1.00[EUR][1000 genomes]
rs61358269	1.00[EUR][1000 genomes]
rs6432204	1.00[EUR][1000 genomes]
rs6432205	1.00[EUR][1000 genomes]
rs6432206	1.00[EUR][1000 genomes]
rs6710070	1.00[EUR][1000 genomes]
rs6712902	1.00[EUR][1000 genomes]
rs6739988	1.00[EUR][1000 genomes]
rs73180141	1.00[EUR][1000 genomes]
rs73915200	1.00[EUR][1000 genomes]
rs73915202	1.00[EUR][1000 genomes]
rs73917203	1.00[EUR][1000 genomes]
rs73917206	1.00[EUR][1000 genomes]
rs73917207	1.00[EUR][1000 genomes]
rs7559230	1.00[EUR][1000 genomes]
rs7565382	1.00[EUR][1000 genomes]
rs7585718	1.00[EUR][1000 genomes]
rs7598673	1.00[EUR][1000 genomes]
rs7608777	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11546600-11584200	Weak transcription	Pancreas	Pancrea
2	chr2:11560400-11584000	Weak transcription	Aorta	Aorta
3	chr2:11560600-11576800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:11561200-11579200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:11561600-11575400	Weak transcription	Fetal Heart	heart
6	chr2:11562200-11573800	Weak transcription	A549	lung
7	chr2:11562800-11582400	Weak transcription	Left Ventricle	heart
8	chr2:11563000-11583800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:11563000-11586800	Weak transcription	Psoas Muscle	Psoas
10	chr2:11563400-11581600	Weak transcription	Adipose Nuclei	Adipose
11	chr2:11564200-11580000	Weak transcription	Ovary	ovary
12	chr2:11564600-11576400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:11565600-11578600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:11566600-11577800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:11567600-11573800	Weak transcription	Dnd41	blood
16	chr2:11567800-11577000	Weak transcription	HSMM	muscle
17	chr2:11569000-11578200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:11569600-11581800	Weak transcription	HepG2	liver
19	chr2:11570800-11576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr2:11570800-11577800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr2:11571200-11582600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:11571200-11582800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr2:11571400-11580000	Weak transcription	HSMMtube	muscle
24	chr2:11571400-11581800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:11571600-11574800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:11571600-11580000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:11571800-11577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:11571800-11581600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:11572000-11574200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:11572000-11575200	Weak transcription	NHEK	skin
31	chr2:11572000-11575400	Weak transcription	HMEC	breast
32	chr2:11572200-11576400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:11572400-11580000	Weak transcription	Gastric	stomach
34	chr2:11572400-11583800	Weak transcription	Colon Smooth Muscle	Colon
35	chr2:11572600-11578400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:11572600-11588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr2:11572800-11578000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:11573000-11574000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr2:11573000-11577400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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