Variant report

Variant	rs58479172
Chromosome Location	chr1:172234476-172234477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16843740	1.00[AMR][1000 genomes]
rs16843882	1.00[AMR][1000 genomes]
rs16844215	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55690470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56109092	1.00[AMR][1000 genomes]
rs56189708	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56239164	1.00[AMR][1000 genomes]
rs56401358	1.00[AMR][1000 genomes]
rs57282950	1.00[AMR][1000 genomes]
rs59207214	1.00[AMR][1000 genomes]
rs74124045	1.00[AMR][1000 genomes]
rs74124046	1.00[AMR][1000 genomes]
rs74124048	1.00[AMR][1000 genomes]
rs74124050	1.00[AMR][1000 genomes]
rs74124052	1.00[AMR][1000 genomes]
rs7541934	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172225600-172246600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172231600-172234800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:172234400-172234600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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