Variant report

Variant	rs58481217
Chromosome Location	chr10:25797280-25797281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25782933..25784846-chr10:25796060..25798061,2	K562	blood:
2	chr10:25758095..25760842-chr10:25796322..25798852,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1329253	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16926013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926017	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16926019	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs57001691	0.92[AFR][1000 genomes]
rs58006889	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58781151	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61549511	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124049	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25791600-25800400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:25792000-25797400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:25795000-25797400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:25795000-25797400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:25796600-25797800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:25796600-25798000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:25796800-25798000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:25796800-25798400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:25797000-25797800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:25797000-25798000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:25797000-25798600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr10:25797200-25797600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:25797200-25797600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:25797200-25797600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:25797200-25797800	Enhancers	Fetal Kidney	kidney
17	chr10:25797200-25798000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:25797200-25798000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:25797200-25798000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:25797200-25798000	Enhancers	K562	blood
21	chr10:25797200-25798200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr10:25797200-25798200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:25797200-25798200	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:25797200-25798400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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