The 2.0 version of rSNPBase

Variant report

Variant rs58489234
Chromosome Location chr1:85799779-85799780
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85790600-85800000 Enhancers HUVEC blood vessel
2 chr1:85792200-85806000 Weak transcription Fetal Kidney kidney
3 chr1:85796200-85799800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr1:85796600-85801800 Weak transcription Gastric stomach
5 chr1:85796600-85804000 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:85796600-85809400 Weak transcription Stomach Mucosa stomach
7 chr1:85796800-85804200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr1:85796800-85805400 Weak transcription Aorta Aorta
9 chr1:85796800-85805400 Weak transcription HepG2 liver
10 chr1:85796800-85806400 Weak transcription Small Intestine intestine
11 chr1:85796800-85809600 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:85797000-85800600 Weak transcription HMEC breast
13 chr1:85797000-85805000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:85797400-85800200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr1:85797600-85800400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:85797600-85803600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:85798200-85800400 Weak transcription NH-A brain
18 chr1:85798400-85803400 Weak transcription Hela-S3 cervix
19 chr1:85798400-85804200 Weak transcription Right Ventricle heart
20 chr1:85798400-85806200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:85798600-85800200 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr1:85798600-85800200 Weak transcription HSMMtube muscle
23 chr1:85798800-85800200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:85798800-85800600 ZNF genes & repeats Primary B cells from peripheral blood blood
25 chr1:85798800-85808400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr1:85798800-85808400 Weak transcription Ovary ovary
27 chr1:85798800-85824800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:85798800-85824800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:85799000-85800200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:85799000-85800200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:85799000-85800400 Weak transcription Fetal Stomach stomach
32 chr1:85799000-85813600 Weak transcription Fetal Intestine Large intestine
33 chr1:85799200-85800200 Strong transcription Muscle Satellite Cultured Cells --
34 chr1:85799400-85800800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:85799400-85801200 Enhancers Dnd41 blood
36 chr1:85799600-85800000 ZNF genes & repeats HSMM muscle
37 chr1:85799600-85800200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
38 chr1:85799600-85800400 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:85799600-85800400 ZNF genes & repeats Fetal Intestine Small intestine
40 chr1:85799600-85800600 Weak transcription Osteobl bone
41 chr1:85799600-85801200 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015