Variant report

Variant	rs58489620
Chromosome Location	chr11:71986128-71986129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71981957..71984429-chr11:71984774..71988358,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11548491	0.83[ASN][1000 genomes]
rs12416741	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12417751	0.93[AFR][1000 genomes]
rs12418533	0.84[ASN][1000 genomes]
rs1783632	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784257	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2276046	0.83[ASN][1000 genomes]
rs2508199	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2508201	0.94[ASN][1000 genomes]
rs2508204	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2508861	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508865	0.94[ASN][1000 genomes]
rs2508866	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36049191	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3900852	0.81[ASN][1000 genomes]
rs472837	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs477354	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs487288	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506041	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55723921	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56229279	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56333926	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56395219	0.86[AFR][1000 genomes]
rs57276029	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57291879	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57464210	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57614093	0.94[ASN][1000 genomes]
rs57669200	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58306819	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58753751	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs590732	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59427981	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59509230	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59612321	0.94[ASN][1000 genomes]
rs59980097	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60024067	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60849224	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61563240	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61736312	0.81[ASN][1000 genomes]
rs650834	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7108974	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116854	0.94[ASN][1000 genomes]
rs7130652	0.94[ASN][1000 genomes]
rs73528886	0.94[ASN][1000 genomes]
rs73528892	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528897	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73530719	0.82[AFR][1000 genomes]
rs73530721	0.89[AFR][1000 genomes]
rs7952074	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9886	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71985200-71990200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:71985600-71986200	Enhancers	Hela-S3	cervix

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